PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01237.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 185aa    MW: 20704.9 Da    PI: 4.4288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01237.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.31e-0958852754
                      AP2 27 krkrfslgkfgtaeeAakaaiaarkkle 54
                             k +r++lg+f taeeAa a++ a+k+++
  Rsa1.0_01237.1_g00005.1 58 KGTRVWLGTFNTAEEAAMAYDVAAKRIR 85
                             349**********************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.8412394IPR001471AP2/ERF domain
SMARTSM003806.9E-1338100IPR001471AP2/ERF domain
PfamPF008471.3E-65685IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-125795IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-175795IPR001471AP2/ERF domain
CDDcd000182.67E-175896No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAVCNFALLN YRNGVESGGG GEIEEGATYG EKKEEESLRR DTQASIGEMG VRDTIFRKGT  60
RVWLGTFNTA EEAAMAYDVA AKRIRRDKAK LNFPDLLHPS SLTSDDLPPA KKLCVHSQSE  120
LAHPSSPVEL LWVREWFYEF QNPSYGVESG YDLLQQISSL ESSLELDGTT AEQPSQLDES  180
RYVDY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893173e-54AC189317.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013749539.15e-52PREDICTED: ethylene-responsive transcription factor RAP2-3-like isoform X1
RefseqXP_009146062.15e-52PREDICTED: ethylene-responsive transcription factor RAP2-3-like isoform X1
RefseqXP_013749540.15e-52PREDICTED: ethylene-responsive transcription factor RAP2-3-like isoform X2
RefseqXP_009146063.15e-52PREDICTED: ethylene-responsive transcription factor RAP2-3-like isoform X2
SwissprotP427362e-49RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A078DUI05e-52A0A078DUI0_BRANA; BnaA05g23130D protein
TrEMBLM4E0795e-52M4E079_BRARP; Uncharacterized protein
STRINGBra022176.1-P1e-51(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2249524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.17e-31ethylene-responsive element binding protein